ARINI RAHMI DEWI, 061514253020 (2019) ANALISIS HOMOLOGI, PHYLOGENETIC TREE DAN PREDIKSI EPITOP GEN PENYANDI 37 kDa ompA DARI ISOLAT Pasteurella multocida ASAL NUSA TENGGARA TIMUR PENELITIAN EKSPLORATIF LABORATORIS. Thesis thesis, Universitas Airlangga.

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Abstract

Thirty seven kDa omp A gene of Pasteurella multocida isolates from NTT buffalo, NTT cattle, and Katha strains were analyzed nucleotide sequence homology and phylogenetic tree with ruminant isolates from various countries in the world: India, China, Iran, and USA from GenBank data and B cell epitope predictions from both NTT isolates. Three Nucleotide sequences from three isolates were homology analyzed using BLAST at NCBI then phylogenetic tree using MEGA-X program and epitope prediction by online program at IEDB. The results showed 93-100% homology, phylogenetic tree of buffalo isolate and strain Katha with bovine from India, China, and Iran; buffalo from India; yak from China; calf from India; and cattle from India. Prediction tools found 5 peptida from both NTT and strain Katha isolates which had a logscore value above 1.

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